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The Crystal Structure of YaeQ Protein from Xanthomonas axonopodis pv. citri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 291 0.1M Tris pH 9, 0.2M ammonium acetate, 32% PEG 4000, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.99 38.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.766 α = 90 b = 91.969 β = 108.35 c = 48.031 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-07-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.97952, 0.97962, 1.00000 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 94.8 0.07 33.7 4 24538 24538
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 86.1 0.425 3 3.7 2210
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 30 24508 24508 1244 94.8 0.194 0.194 0.192 0.1923 0.247 0.2469 RANDOM 38.299
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.16 0.33 2.46 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.791 r_dihedral_angle_4_deg 17.362 r_dihedral_angle_3_deg 15.682 r_dihedral_angle_1_deg 6.923 r_scangle_it 3.389 r_scbond_it 2.328 r_angle_refined_deg 1.481 r_mcangle_it 1.364 r_mcbond_it 0.91 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.791 r_dihedral_angle_4_deg 17.362 r_dihedral_angle_3_deg 15.682 r_dihedral_angle_1_deg 6.923 r_scangle_it 3.389 r_scbond_it 2.328 r_angle_refined_deg 1.481 r_mcangle_it 1.364 r_mcbond_it 0.91 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2841 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing