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Structure of E.coli FabD complexed with malonyl-CoA
Crystallization Crystal Properties Matthews coefficient Solvent content 4.41 72.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.337 α = 90 b = 83.337 β = 90 c = 164.365 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 2001-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 96.9 14482 14482 3.9 3.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.97 99.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.8 20 13719 13719 731 97.1 0.24 0.23985 0.23751 0.2226 0.28415 0.2585 RANDOM 40.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.3 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 25.308 r_dihedral_angle_1_deg 9.836 r_scangle_it 6.505 r_mcangle_it 5.64 r_scbond_it 4.157 r_mcbond_it 3.736 r_angle_refined_deg 1.53 r_angle_other_deg 0.689 r_symmetry_vdw_refined 0.548 r_symmetry_hbond_refined 0.515
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 25.308 r_dihedral_angle_1_deg 9.836 r_scangle_it 6.505 r_mcangle_it 5.64 r_scbond_it 4.157 r_mcbond_it 3.736 r_angle_refined_deg 1.53 r_angle_other_deg 0.689 r_symmetry_vdw_refined 0.548 r_symmetry_hbond_refined 0.515 r_nbtor_other 0.491 r_symmetry_vdw_other 0.406 r_nbd_refined 0.303 r_nbd_other 0.291 r_xyhbond_nbd_refined 0.189 r_xyhbond_nbd_other 0.085 r_chiral_restr 0.069 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2257 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing