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Crystal Structure of the SHV D104K Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SHV polyalanine models of chain A from PDB 1SHV and chain B from PDB 1JTG experimental model PDB 1JTG polyalanine models of chain A from PDB 1SHV and chain B from PDB 1JTG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.5 293 4% PEG 8000, 25mM cacodylate, 10 mM BisTris, 25mM NaCl, pH 6.5, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.24 45.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.563 α = 78.88 b = 44.825 β = 88.94 c = 62.902 γ = 62.42
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 95.9 0.03 25.389 2 35776 35776 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 89.7 0.096 6.07 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT polyalanine models of chain A from PDB 1SHV and chain B from PDB 1JTG 1.8 30 35772 33986 1786 95.82 0.18172 0.17966 0.1814 0.22183 0.2218 RANDOM 22.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.8 -2.1 1.24 1.43 -2.06 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.76 r_dihedral_angle_4_deg 16.248 r_dihedral_angle_3_deg 15.172 r_dihedral_angle_1_deg 6.09 r_scangle_it 3.181 r_scbond_it 2.021 r_mcangle_it 1.238 r_angle_refined_deg 1.209 r_mcbond_it 0.756 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.76 r_dihedral_angle_4_deg 16.248 r_dihedral_angle_3_deg 15.172 r_dihedral_angle_1_deg 6.09 r_scangle_it 3.181 r_scbond_it 2.021 r_mcangle_it 1.238 r_angle_refined_deg 1.209 r_mcbond_it 0.756 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.22 r_symmetry_hbond_refined 0.219 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.095 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3254 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction