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CRYSTAL STRUCTURE OF A PUTATIVE TRANSPORT PROTEIN (TM1088A) FROM THERMOTOGA MARITIMA AT 1.50 A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LSS 1lss chain A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6.5 293 40.0% MPD, 5.0% PEG-8000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.44 49.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.859 α = 90 b = 35.14 β = 111.85 c = 56.579 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 44.421 93.4 0.048 0.048 9.7 5.1 26312
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 93.4 63.8 0.344 0.344 2.2 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1lss chain A 1.5 44.42 26310 1332 93.03 0.154 0.15407 0.153 0.1658 0.175 0.1876 RANDOM 15.075
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 -0.93 1.03 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.576 r_dihedral_angle_3_deg 12.099 r_dihedral_angle_4_deg 11.71 r_scangle_it 7.609 r_dihedral_angle_1_deg 5.154 r_scbond_it 4.936 r_mcangle_it 2.775 r_angle_refined_deg 1.648 r_mcbond_it 1.608 r_angle_other_deg 0.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.576 r_dihedral_angle_3_deg 12.099 r_dihedral_angle_4_deg 11.71 r_scangle_it 7.609 r_dihedral_angle_1_deg 5.154 r_scbond_it 4.936 r_mcangle_it 2.775 r_angle_refined_deg 1.648 r_mcbond_it 1.608 r_angle_other_deg 0.829 r_mcbond_other 0.488 r_symmetry_vdw_refined 0.333 r_nbd_refined 0.212 r_nbtor_refined 0.185 r_nbd_other 0.184 r_symmetry_vdw_other 0.162 r_xyhbond_nbd_refined 0.143 r_symmetry_metal_ion_refined 0.105 r_symmetry_hbond_refined 0.1 r_chiral_restr 0.098 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_metal_ion_refined 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1053 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling MOLREP phasing