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Crystal structure of a putative nucleotide binding protein (tm0796) from Thermotoga maritima at 2.67 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 6.6 277 0.2M NH4Formate, 20.0% PEG-3350, No Buffer, pH 6.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.9 68.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 191.634 α = 90 b = 191.634 β = 90 c = 191.634 γ = 90
Symmetry Space Group P 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2004-07-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.979224, 0.979508, 0.885567 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 29.928 99.6 0.188 0.188 3.7 9.5 34565
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.74 96.5 0.892 0.892 0.8 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.67 29.57 34472 1734 99.56 0.208 0.207 0.238 0.22 RANDOM 32.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.912 r_dihedral_angle_4_deg 11.515 r_dihedral_angle_3_deg 9.58 r_angle_refined_deg 2.367 r_dihedral_angle_1_deg 1.897 r_angle_other_deg 1.482 r_scangle_it 1.454 r_scbond_it 0.927 r_mcangle_it 0.738 r_mcbond_it 0.537
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.912 r_dihedral_angle_4_deg 11.515 r_dihedral_angle_3_deg 9.58 r_angle_refined_deg 2.367 r_dihedral_angle_1_deg 1.897 r_angle_other_deg 1.482 r_scangle_it 1.454 r_scbond_it 0.927 r_mcangle_it 0.738 r_mcbond_it 0.537 r_symmetry_vdw_other 0.212 r_nbd_refined 0.205 r_nbtor_refined 0.172 r_nbd_other 0.153 r_symmetry_vdw_refined 0.146 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.1 r_nbtor_other 0.08 r_mcbond_other 0.078 r_symmetry_hbond_refined 0.046 r_xyhbond_nbd_other 0.011 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5176 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing