2G0Q
Solution structure of At5g39720.1 from Arabidopsis thaliana
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.9 mM At5g39720.1 U-15N/13C, 10 mM deuterated Bis-Tris, 100 mM NaCl, 5 mM Dithiothreitol, 95% H2O, 5% D2O | 95% H2O/5% D2O | 101 mM | 7.0 | AMBIENT | 298 | |
2 | 3D_13C-separated_NOESY | 0.9 mM At5g39720.1 U-15N/13C, 10 mM deuterated Bis-Tris, 100 mM NaCl, 5 mM Dithiothreitol, 95% H2O, 5% D2O | 95% H2O/5% D2O | 101 mM | 7.0 | AMBIENT | 298 | |
3 | 3D_13C-separated_NOESY (AROMATIC) | 0.9 mM At5g39720.1 U-15N/13C, 10 mM deuterated Bis-Tris, 100 mM NaCl, 5 mM Dithiothreitol, 95% H2O, 5% D2O | 95% H2O/5% D2O | 101 mM | 7.0 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT | STRUCTURES ARE BASED ON A TOTAL OF 1989 NOE CONSTRAINTS ( 522 INTRA, 564 SEQEUNTIAL, 267 MEDIUM and 636 LONG RANGE CONSTRAINTS) AND 189 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. | XPLOR-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | ALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED USING A CRYOGENIC PROBE. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | XPLOR-NIH | 2.9.3 | SCHWIETERS, C.D.,KUSZEWSKI, J.J.,TJANDRA, N., CLORE, G.M. |
2 | collection | XwinNMR | 3.5 | |
3 | processing | NMRPipe | 2004 | |
4 | data analysis | SPSCAN | 1.1.0 | |
5 | data analysis | XEASY | 1.3 | |
6 | data analysis | GARANT | 2.1 |