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The structure of FeeM, an N-acyl amino acid synthase from uncultured soil microbes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 289 4.06 M NaCl, 50 mM glycine, pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.6 65.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.832 α = 90 b = 182.832 β = 90 c = 287.429 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-07-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 8-BM 0.9795, 0.9422, 0.9793 APS 8-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 129.1 99.97 0.081 7.8737 16.4 48895 48895
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.15 100 0.16 1.31 16.9 6574
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3 29.75 48826 2458 100 0.257 0.255 0.2449 0.292 0.2807 RANDOM 40.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.658 r_angle_refined_deg 0.917 r_scangle_it 0.36 r_symmetry_hbond_refined 0.335 r_scbond_it 0.233 r_xyhbond_nbd_refined 0.169 r_nbd_refined 0.151 r_symmetry_vdw_refined 0.145 r_mcangle_it 0.127 r_mcbond_it 0.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.658 r_angle_refined_deg 0.917 r_scangle_it 0.36 r_symmetry_hbond_refined 0.335 r_scbond_it 0.233 r_xyhbond_nbd_refined 0.169 r_nbd_refined 0.151 r_symmetry_vdw_refined 0.145 r_mcangle_it 0.127 r_mcbond_it 0.067 r_chiral_restr 0.066 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11290 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 208
Software Software Software Name Purpose SCALA data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling