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Crystal structure of bovine heart mitochondrial bc1 with jg144 inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L0N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 277.2 50 mM MOPS 7.2pH, 20 mM Ammonium acetate, 20% glycerol.Incubation with 2-5 mol excess of JG144. Precipitant 12% PEG4000, 0.5 M KCl, 0.1% DHPC; Protein:PPT ratio 1:0.57, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
Crystal Properties Matthews coefficient Solvent content 3.64 66.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.263 α = 90 b = 154.263 β = 90 c = 590.191 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH 2004-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0090 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 50 86.1 0.056 17.2 4 157290 -0.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.34 42.4 0.382 1.8 13582
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1l0n 2.26 40 157290 157290 3230 96.89 0.24916 0.24916 0.24843 0.28328 RANDOM 25.239
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.36 2.36 -4.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.115 r_scangle_it 7.314 r_scbond_it 5.686 r_mcangle_it 2.514 r_angle_refined_deg 2.063 r_mcbond_it 0.592 r_chiral_restr 0.2 r_nbd_refined 0.117 r_xyhbond_nbd_refined 0.096 r_symmetry_vdw_refined 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.115 r_scangle_it 7.314 r_scbond_it 5.686 r_mcangle_it 2.514 r_angle_refined_deg 2.063 r_mcbond_it 0.592 r_chiral_restr 0.2 r_nbd_refined 0.117 r_xyhbond_nbd_refined 0.096 r_symmetry_vdw_refined 0.094 r_symmetry_hbond_refined 0.068 r_gen_planes_refined 0.026 r_bond_refined_d 0.021 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16477 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 156
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling