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Crystal Structure of the Norwalk Virus Protease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 298 0.1M lithium sulfate, 0.1M bis-tris, 0.1M EDTA, 20% PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 5.50
Crystal Properties Matthews coefficient Solvent content 2.87 57.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.833 α = 90 b = 121.833 β = 90 c = 51.369 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 31.5 99.1 36055
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 0.457 4.1
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.5 105.41 36046 36046 1800 99 0.185 0.211 0.2033 17.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.03 -0.06 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.522 r_dihedral_angle_4_deg 17.037 r_dihedral_angle_3_deg 11.219 r_dihedral_angle_1_deg 6.485 r_sphericity_free 3.076 r_scangle_it 2.794 r_sphericity_bonded 2.148 r_scbond_it 2.116 r_rigid_bond_restr 1.694 r_mcangle_it 1.494
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.522 r_dihedral_angle_4_deg 17.037 r_dihedral_angle_3_deg 11.219 r_dihedral_angle_1_deg 6.485 r_sphericity_free 3.076 r_scangle_it 2.794 r_sphericity_bonded 2.148 r_scbond_it 2.116 r_rigid_bond_restr 1.694 r_mcangle_it 1.494 r_angle_refined_deg 1.207 r_mcbond_it 0.955 r_symmetry_vdw_refined 0.437 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.276 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1271 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 7
Software Software Software Name Purpose d*TREK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction