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Haddock model of the complex between double module of LRP, CR56, and first domain of receptor associated protein, RAP-d1.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 Exchange 15N,1H-HSQC 0.1mM [U-99% 15N]-CR56; 0.1mM RAPd1; H2O/D2O (90:10) H2O/D2O (90:10) 7.0 ambient 298 2 Exchange 15N,1H,-HSQC 0.5mM [U-99% 15N]-RAPd1; 0.5mM CR56; H2O/D2O (90:10) H2O/D2O (90:10) 3 15N,1H-HSQC 0.1mM [U-99% 15N]-CR56; 0.1mM RAPd1; H2O/D2O (90:10) H2O/D2O (90:10) 7.0 ambient 298 4 15N,1H-HSQC 0.5mM [U-99% 15N]-RAPd1; 0.5mM CR56; H2O/D2O (90:10) H2O/D2O (90:10) 5 HNCA 0.08 mM [U-99% 15N, U-99% 13C]-CR56; 0.08 mM [U-99% 15N, U-99% 13C]-RAPd1; H2O/D2O (90:10) H2O/D2O (90:10) 6 HNCACB, HN(CO)CACB 0.08 mM [U-99% 15N, U-99% 13C]-CR56; 0.08 mM [U-99% 15N, U-99% 13C]-RAPd1; H2O/D2O (90:10) H2O/D2O (90:10)
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 800
NMR Refinement Method Details Software HADDOCK modelling from chemical shift perturbation data on both complex partners Pronto3D
NMR Ensemble Information Conformer Selection Criteria Best averaged HADDOCK score Conformers Calculated Total Number 200 Conformers Submitted Total Number 1 Representative Model 5 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis Pronto3D 20020517 Kjaer et al 2 structure solution HADDOCK Bonvin et al 3 refinement HADDOCK Bonvin et al