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Structure of a putative phosphoserine aminotransferase from Mycobacterium Tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 Tris-HCl 100mM, NH4SO4 2.2M, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.28 46.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.478 α = 90 b = 94.056 β = 90 c = 101.063 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-09-25 M SINGLE WAVELENGTH 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.07198 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 25 99.7 0.086 17.38 5 118835 118835 12.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 98.1 98.1 0.559 2.6 4.7 11589
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR 1.5 19.932 118697 118697 5973 99.724 0.145 0.145 0.144 0.146 0.1664 0.1681 Random 8.154
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.034 -0.027 -0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.048 r_dihedral_angle_4_deg 16.555 r_dihedral_angle_3_deg 11.377 r_dihedral_angle_1_deg 5.855 r_scangle_it 2.951 r_scbond_it 2.032 r_angle_refined_deg 1.487 r_scangle_other 1.178 r_mcangle_it 1.118 r_mcbond_it 0.921
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.048 r_dihedral_angle_4_deg 16.555 r_dihedral_angle_3_deg 11.377 r_dihedral_angle_1_deg 5.855 r_scangle_it 2.951 r_scbond_it 2.032 r_angle_refined_deg 1.487 r_scangle_other 1.178 r_mcangle_it 1.118 r_mcbond_it 0.921 r_angle_other_deg 0.862 r_scbond_other 0.648 r_mcangle_other 0.486 r_nbd_refined 0.223 r_mcbond_other 0.219 r_symmetry_vdw_other 0.217 r_nbd_other 0.184 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.14 r_metal_ion_refined 0.119 r_symmetry_vdw_refined 0.112 r_chiral_restr 0.085 r_nbtor_other 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5566 Nucleic Acid Atoms Solvent Atoms 846 Heterogen Atoms 99
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction