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Structure of the human beta-myosin S2 fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XNM PDB ENTRY 1XNM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 296 PEG 3350, SODIUM ACETATE, TRIS-HCL, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.6 52.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.157 α = 91.11 b = 41.867 β = 92.73 c = 97.795 γ = 107.18
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 96 0.08 9 3.2 20190 -3 61
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 96.6 0.388 3.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD WITH SEMI-BRUTE- FORCE MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1XNM 2.5 20 19157 1040 96.2 0.277 0.273 0.2691 0.349 0.3462 RANDOM 61.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.3 1.34 -5.88 0.74 -0.69 1.76
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 9.684 r_mcangle_it 8.38 r_scbond_it 6.774 r_mcbond_it 6.269 r_dihedral_angle_1_deg 6.104 r_angle_other_deg 3.65 r_angle_refined_deg 1.526 r_symmetry_vdw_other 0.286 r_nbd_other 0.259 r_nbd_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 9.684 r_mcangle_it 8.38 r_scbond_it 6.774 r_mcbond_it 6.269 r_dihedral_angle_1_deg 6.104 r_angle_other_deg 3.65 r_angle_refined_deg 1.526 r_symmetry_vdw_other 0.286 r_nbd_other 0.259 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.189 r_symmetry_hbond_refined 0.131 r_nbtor_other 0.104 r_chiral_restr 0.071 r_bond_refined_d 0.016 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4145 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XDS data scaling XDS data reduction SHELXD phasing MOLEMAN2 model building REFMAC refinement MOLEMAN2 phasing