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Structure of the Protease Production Regulatory Protein hpr from Bacillus subtilis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 292 0.2M K/Na tartrate tetrahydrate, 20% PEG 3350, pH 7.5, VAPOR DIFFUSION, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.76 55.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.272 α = 90 b = 79.909 β = 100.18 c = 131.239 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-06-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97887, 0.97943 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.4 41448 41448
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 91.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 50 39352 39352 2095 99.21 0.20945 0.20945 0.2081 0.2076 0.23392 0.2294 RANDOM 64.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.75 0.99 3.13 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.376 r_dihedral_angle_3_deg 19.281 r_dihedral_angle_4_deg 19.205 r_dihedral_angle_1_deg 5.742 r_scangle_it 3.907 r_scbond_it 2.631 r_mcangle_it 1.6 r_angle_refined_deg 1.5 r_mcbond_it 1.405 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.376 r_dihedral_angle_3_deg 19.281 r_dihedral_angle_4_deg 19.205 r_dihedral_angle_1_deg 5.742 r_scangle_it 3.907 r_scbond_it 2.631 r_mcangle_it 1.6 r_angle_refined_deg 1.5 r_mcbond_it 1.405 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.275 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.136 r_chiral_restr 0.106 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5443 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction HKL-2000 data scaling CNS phasing autoSHARP phasing