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Crystal Structure of HlyIIR, a Hemolysin II transcriptional Regulator
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 40% saturation ammonium sulfate, 0.1M sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.76 67.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.208 α = 90 b = 124.208 β = 90 c = 79.667 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-09-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9792,0.9794,0.9184 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 25 99.5 0.063 19.9 4.8 14561 14561 45.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.7 0.34 5 4.9 1431
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 24.68 14590 13895 695 100 0.22335 0.22335 0.22085 0.27648 RANDOM 51.916
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.39 0.7 1.39 -2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.879 r_dihedral_angle_3_deg 15.644 r_dihedral_angle_4_deg 13.018 r_scangle_it 6.787 r_dihedral_angle_1_deg 5.954 r_scbond_it 4.569 r_mcangle_it 1.895 r_mcbond_it 1.274 r_angle_refined_deg 1.172 r_symmetry_vdw_refined 0.389
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.879 r_dihedral_angle_3_deg 15.644 r_dihedral_angle_4_deg 13.018 r_scangle_it 6.787 r_dihedral_angle_1_deg 5.954 r_scbond_it 4.569 r_mcangle_it 1.895 r_mcbond_it 1.274 r_angle_refined_deg 1.172 r_symmetry_vdw_refined 0.389 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.224 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1476 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing