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Crystal Structure of Rv0813
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 7.5 298 NH4(2)SO4, pH 7.5, hanging drop, temperature 298K 2 hanging drop 7.5 298 NaCl, pH 7.5, hanging drop, temperature 298K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.836 α = 90 b = 65.836 β = 90 c = 239.714 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-06-26 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2002-11-11 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97895 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.97895 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 50.833 100 0.07 0.07 19.6 6.6 29663 29663
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.79 100 0.316 0.316 5.2 6.4 4255
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD with data collected on Se-Met crystal at 0.97895 A. THROUGHOUT 1.7 43.44 29635 29635 1503 100 0.183 0.183 0.181 0.1802 0.223 0.2211 RANDOM 20.166
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.09 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.722 r_dihedral_angle_4_deg 16.69 r_dihedral_angle_3_deg 12.249 r_dihedral_angle_1_deg 6.589 r_scangle_it 3.984 r_scbond_it 2.603 r_mcangle_it 1.816 r_angle_refined_deg 1.533 r_mcbond_it 1.137 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.722 r_dihedral_angle_4_deg 16.69 r_dihedral_angle_3_deg 12.249 r_dihedral_angle_1_deg 6.589 r_scangle_it 3.984 r_scbond_it 2.603 r_mcangle_it 1.816 r_angle_refined_deg 1.533 r_mcbond_it 1.137 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.123 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1461 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 30
Software Software Software Name Purpose SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling