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High Resolution Glucose Bound Crystal Structure of GGBP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Salmonella Typhimuruim GGBP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 298 25% PEG 4000, 5% Glycerol, 0.1M HEPES PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 2.12 42.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.989 α = 90 b = 36.238 β = 124.5 c = 80.101 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2004-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.83 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.92 9 95.3 0.045 0.027 36.8 4.2 196667 187424 8.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.92 0.95 74.7 0.247 2.7 2.4 14655
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R Salmonella Typhimuruim GGBP 0.92 9 178035 187424 9389 90.6 0.1097 0.1179 0.11 0.1296 0.1049 RANDOM 12.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 23 2277 2761.75
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.136 s_zero_chiral_vol 0.111 s_approx_iso_adps 0.096 s_anti_bump_dis_restr 0.052 s_angle_d 0.032 s_from_restr_planes 0.0301 s_similar_adp_cmpnt 0.03 s_bond_d 0.018 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2319 Nucleic Acid Atoms Solvent Atoms 418 Heterogen Atoms 26
Software Software Software Name Purpose SHELXL-97 refinement SCALEPACK data scaling AMoRE phasing CNS refinement HKL-2000 data collection HKL-2000 data reduction