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Human Diphosphoinositol polyphosphate phosphohydrolase 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 30% PEG8000, 0.2M Lithium sulphate, 0.1M SODIUM ACETATE, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.04 39.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.653 α = 90 b = 59.9 β = 90 c = 61.735 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 Helios Multilayer 2005-12-27 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH Double crystal monochromator 2005-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418 2 SYNCHROTRON MAX II BEAMLINE I911-5 0.97957 MAX II I911-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.25 27.44 90.5 0.0809 23.93 8.88 50655 45852 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.34 58.1 0.2757 2.74 1.55
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R 1.25 10 50655 45852 922 90.5 0.173 0.171 0.171 0.222 0.2103 RANDOM 25.492
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.122 s_non_zero_chiral_vol 0.109 s_similar_adp_cmpnt 0.071 s_zero_chiral_vol 0.068 s_angle_d 0.037 s_from_restr_planes 0.031 s_bond_d 0.017 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist s_anti_bump_dis_restr
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1181 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 42
Software Software Software Name Purpose SHELX refinement PDB_EXTRACT data extraction PROTEUM PLUS data reduction SAINT data reduction XDS data reduction SADABS data scaling XSCALE data scaling SHELXD phasing SHELXL-97 refinement