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Crystal structure of the glycine receptor-gephyrin complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 311 0.1M Tris-HCl (pH 7.5), 0.1-0.2 M KSCN, 25-30% PEG 4000, vapor diffusion, hanging drop, temperature 311K
Crystal Properties Matthews coefficient Solvent content 2.6 52.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.298 α = 90 b = 123.541 β = 90 c = 155.047 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-02-03 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.1 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 50 89.6 0.096 10.6 4.8 18221
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.47 75.3 0.563 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.41 20 18182 934 93.2 0.196 0.192 0.272 0.2771 RANDOM 40.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 2.46 -2.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.085 r_dihedral_angle_4_deg 17.261 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 5.027 r_scangle_it 2.113 r_angle_refined_deg 1.619 r_scbond_it 1.378 r_mcangle_it 0.902 r_angle_other_deg 0.839 r_mcbond_it 0.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.085 r_dihedral_angle_4_deg 17.261 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 5.027 r_scangle_it 2.113 r_angle_refined_deg 1.619 r_scbond_it 1.378 r_mcangle_it 0.902 r_angle_other_deg 0.839 r_mcbond_it 0.793 r_symmetry_hbond_refined 0.301 r_xyhbond_nbd_refined 0.208 r_nbd_refined 0.207 r_symmetry_vdw_other 0.206 r_nbd_other 0.187 r_symmetry_vdw_refined 0.182 r_nbtor_refined 0.174 r_mcbond_other 0.108 r_chiral_restr 0.101 r_nbtor_other 0.085 r_bond_refined_d 0.019 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3298 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction