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Crystal structure of an ethyl tert-butyl ether d (ethd) family protein (bh0200) from bacillus halodurans c-125 at 1.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6 277 10.0% Glycerol, 5.0% PEG-1000, 30.0% PEG-600, 0.1M MES pH 6.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.04 39.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.53 α = 90 b = 45.454 β = 99.93 c = 51.423 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 17.61 83.9 0.069 0.069 6.3 3.4 36413
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 35.2 0.246 0.246 3.1 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 17.61 36399 1836 83.43 0.149 0.14921 0.148 0.1597 0.174 0.1833 RANDOM 18.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 -0.26 0.54 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.729 r_dihedral_angle_4_deg 14.172 r_dihedral_angle_3_deg 12.717 r_dihedral_angle_1_deg 5.47 r_scangle_it 4.892 r_scbond_it 3.889 r_mcangle_it 1.894 r_mcbond_it 1.821 r_angle_refined_deg 1.329 r_angle_other_deg 0.726
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.729 r_dihedral_angle_4_deg 14.172 r_dihedral_angle_3_deg 12.717 r_dihedral_angle_1_deg 5.47 r_scangle_it 4.892 r_scbond_it 3.889 r_mcangle_it 1.894 r_mcbond_it 1.821 r_angle_refined_deg 1.329 r_angle_other_deg 0.726 r_mcbond_other 0.225 r_nbd_refined 0.221 r_symmetry_vdw_other 0.193 r_nbtor_refined 0.185 r_symmetry_hbond_refined 0.169 r_nbd_other 0.167 r_symmetry_vdw_refined 0.145 r_xyhbond_nbd_refined 0.143 r_nbtor_other 0.083 r_chiral_restr 0.082 r_xyhbond_nbd_other 0.058 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1591 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing SHARP phasing