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Structure of Cu(I)azurin at pH 6, with the metal-binding loop sequence "CTFPGHSALM" replaced with "CTPHPM"
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 0.1MM MES, 20% PEG6000, 0.2M LiCl, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.87 34.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.957 α = 90 b = 51.957 β = 90 c = 75.41 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 1.075 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 42.8 99.6 0.06 0.06 24.9 9.5 29159 29159 14.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 100 0.324 0.324 6.7 8.6 2999
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Direct refinement using refined AZAMI-F Cu(II) structure THROUGHOUT 1.4 42.8 20853 20853 1045 99.32 0.141 0.141 0.139 0.1395 0.178 0.1806 RANDOM 13.252
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.48 0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.869 r_dihedral_angle_4_deg 20.181 r_sphericity_free 11.519 r_dihedral_angle_3_deg 10.663 r_sphericity_bonded 6.973 r_dihedral_angle_1_deg 6.566 r_scangle_it 4.815 r_scbond_it 3.828 r_mcangle_it 2.849 r_mcbond_it 2.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.869 r_dihedral_angle_4_deg 20.181 r_sphericity_free 11.519 r_dihedral_angle_3_deg 10.663 r_sphericity_bonded 6.973 r_dihedral_angle_1_deg 6.566 r_scangle_it 4.815 r_scbond_it 3.828 r_mcangle_it 2.849 r_mcbond_it 2.182 r_rigid_bond_restr 1.75 r_angle_refined_deg 1.707 r_mcbond_other 1.187 r_angle_other_deg 0.876 r_symmetry_vdw_refined 0.313 r_symmetry_vdw_other 0.288 r_nbd_refined 0.244 r_symmetry_hbond_refined 0.191 r_nbd_other 0.189 r_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.175 r_chiral_restr 0.114 r_nbtor_other 0.09 r_bond_refined_d 0.018 r_metal_ion_refined 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 965 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction