☰ Navigation Tabs
Crystal Structure of the PhnH Protein from Escherichia Coli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.5 295 magnesium acetate, PEG 4000, sodium citrate pH 3.5 with protein in HEPES buffer, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.93 36.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.02 α = 90 b = 87.418 β = 90 c = 75.89 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-11-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.979029, 0.978681, 0.925256 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 50 100 0.045 42 24912 24912 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.77 35.1 0.43 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 38.92 18698 18698 977 94.53 0.19091 0.18789 0.1848 0.24842 0.24 RANDOM 23.678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.721 r_dihedral_angle_4_deg 14.545 r_dihedral_angle_3_deg 13.451 r_scangle_it 7.342 r_dihedral_angle_1_deg 6.211 r_scbond_it 4.537 r_mcangle_it 2.706 r_angle_refined_deg 2.308 r_mcbond_it 1.645 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.721 r_dihedral_angle_4_deg 14.545 r_dihedral_angle_3_deg 13.451 r_scangle_it 7.342 r_dihedral_angle_1_deg 6.211 r_scbond_it 4.537 r_mcangle_it 2.706 r_angle_refined_deg 2.308 r_mcbond_it 1.645 r_nbtor_refined 0.316 r_symmetry_vdw_refined 0.313 r_nbd_refined 0.269 r_symmetry_hbond_refined 0.269 r_chiral_restr 0.194 r_xyhbond_nbd_refined 0.194 r_bond_refined_d 0.029 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1274 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling SOLVE phasing CNS refinement HKL-2000 data reduction HKL-2000 data collection