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Complex SecA:ADP from Escherichia coli
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FSF
Crystallization Crystal Properties Matthews coefficient Solvent content 2.82 56.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.56 α = 90 b = 90.43 β = 100.82 c = 163.29 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.976200 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 19.85 90.6 0.039 11.66 1.86 124578 112860 43.935
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.11 2.24 51.3 0.22 3.1 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2FSF 2.11 19.85 124578 112860 5666 90.59 0.206 0.203 0.2564 0.263 0.2995 RANDOM 39.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.01 0.02 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.991 r_dihedral_angle_3_deg 19.917 r_dihedral_angle_4_deg 18.759 r_dihedral_angle_1_deg 8.239 r_scangle_it 4.712 r_scbond_it 3.367 r_angle_refined_deg 2.279 r_mcangle_it 2.105 r_mcbond_it 1.749 r_angle_other_deg 1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.991 r_dihedral_angle_3_deg 19.917 r_dihedral_angle_4_deg 18.759 r_dihedral_angle_1_deg 8.239 r_scangle_it 4.712 r_scbond_it 3.367 r_angle_refined_deg 2.279 r_mcangle_it 2.105 r_mcbond_it 1.749 r_angle_other_deg 1.09 r_mcbond_other 0.414 r_symmetry_vdw_other 0.25 r_nbd_refined 0.238 r_nbd_other 0.218 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_other 0.213 r_xyhbond_nbd_refined 0.191 r_nbtor_refined 0.189 r_symmetry_hbond_refined 0.183 r_chiral_restr 0.153 r_nbtor_other 0.097 r_bond_refined_d 0.03 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11448 Nucleic Acid Atoms Solvent Atoms 434 Heterogen Atoms 54
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction