☰ Navigation Tabs
Complex SecA:AMP-PNP from Escherichia coli
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FSG
Crystallization Crystal Properties Matthews coefficient Solvent content 2.79 55.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.02 α = 90 b = 90.01 β = 100.52 c = 163.02 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.976200 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 90.5 0.051 11.11 2.34 143843 130193 47.066
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 61.5 0.331 2.3 1.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2FSG 2 19.97 143843 130193 6538 90.5 0.206 0.204 0.255 0.255 0.2949 RANDOM 43.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.948 r_dihedral_angle_3_deg 19.158 r_dihedral_angle_4_deg 17.18 r_dihedral_angle_1_deg 7.571 r_scangle_it 4.575 r_scbond_it 3.188 r_angle_refined_deg 2.074 r_mcangle_it 1.99 r_mcbond_it 1.666 r_angle_other_deg 1.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.948 r_dihedral_angle_3_deg 19.158 r_dihedral_angle_4_deg 17.18 r_dihedral_angle_1_deg 7.571 r_scangle_it 4.575 r_scbond_it 3.188 r_angle_refined_deg 2.074 r_mcangle_it 1.99 r_mcbond_it 1.666 r_angle_other_deg 1.002 r_mcbond_other 0.347 r_symmetry_hbond_refined 0.291 r_symmetry_vdw_other 0.24 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.229 r_nbd_other 0.213 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.181 r_chiral_restr 0.126 r_nbtor_other 0.094 r_xyhbond_nbd_other 0.085 r_bond_refined_d 0.026 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11235 Nucleic Acid Atoms Solvent Atoms 431 Heterogen Atoms 62
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction