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Crystal Structure of Rv2717c from M. tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 PEG2000MME 18.714%, Na-K-Phosphate 0.1M, Isopropanol 9.394%, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.52 51.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.847 α = 90 b = 73.483 β = 90 c = 80.64 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.4 0.055 14 4.2 29018 28843 16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 96.3 0.416 2 3.2 2796
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 40.32 27360 1479 99.1 0.18004 0.18004 0.17891 0.1791 0.20172 0.2009 RANDOM 18.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.01 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.33 r_dihedral_angle_4_deg 21.537 r_dihedral_angle_3_deg 12.357 r_dihedral_angle_1_deg 6.468 r_scangle_it 4.403 r_scbond_it 3.037 r_mcangle_it 1.941 r_angle_refined_deg 1.642 r_mcbond_it 1.159 r_symmetry_hbond_refined 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.33 r_dihedral_angle_4_deg 21.537 r_dihedral_angle_3_deg 12.357 r_dihedral_angle_1_deg 6.468 r_scangle_it 4.403 r_scbond_it 3.037 r_mcangle_it 1.941 r_angle_refined_deg 1.642 r_mcbond_it 1.159 r_symmetry_hbond_refined 0.336 r_nbtor_refined 0.304 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.12 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1224 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing