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Metal-depleted Ecl18kI in complex with uncleaved DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.1 294 0.4M (NH4)H2PO4, pH 4.1, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.26 45.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.371 α = 90 b = 95.519 β = 90 c = 190.173 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT MIRROR 2002-05-27 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH 2002-11-06 M MAD 3 1 x-ray 100 CCD MARRESEARCH 2005-09-18 M MAD 1,2,3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8019 EMBL/DESY, HAMBURG X13 2 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05, 0.900, 0.9198, 0.9200 MPG/DESY, HAMBURG BW6 3 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 0.9792, 0.9795 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2 20 93.4 0.034 0.034 41 3.6 93417 93417 35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 2 2.03 97.5 0.24 0.24 5.12 4852
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 20 90885 90885 4608 92 0.22 0.22 0.21 0.2101 0.26 0.2527 RANDOM 36.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 -0.66 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.877 r_dihedral_angle_4_deg 17.08 r_dihedral_angle_3_deg 16.494 r_dihedral_angle_1_deg 5.571 r_scangle_it 2.726 r_scbond_it 1.999 r_angle_refined_deg 1.332 r_mcangle_it 1.228 r_mcbond_it 1.013 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.877 r_dihedral_angle_4_deg 17.08 r_dihedral_angle_3_deg 16.494 r_dihedral_angle_1_deg 5.571 r_scangle_it 2.726 r_scbond_it 1.999 r_angle_refined_deg 1.332 r_mcangle_it 1.228 r_mcbond_it 1.013 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.252 r_symmetry_hbond_refined 0.241 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9638 Nucleic Acid Atoms 726 Solvent Atoms 555 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing SHELXE model building MLPHARE phasing GETAX phasing DM phasing