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Crystal structure of a cupin domain (bp2299) from bordetella pertussis tohama i at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 8.5 277 0.2M NaOAc, 30.0% PEG-4000, 0.1M TRIS pH 8.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.83 36.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.919 α = 90 b = 92.651 β = 106.4 c = 53.058 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-10-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.019867, 0.979741 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19 90.3 0.064 0.064 11.2 4.1 27712 13.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 94.6 0.302 0.302 2.24 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 19 27688 1401 89.79 0.156 0.156 0.154 0.1646 0.202 0.2114 RANDOM 14.089
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 -0.03 -0.63 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.21 r_dihedral_angle_4_deg 18.054 r_dihedral_angle_3_deg 13.125 r_dihedral_angle_1_deg 6.861 r_scangle_it 6.238 r_scbond_it 4.611 r_mcangle_it 2.666 r_mcbond_it 2.143 r_angle_refined_deg 1.538 r_angle_other_deg 0.765
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.21 r_dihedral_angle_4_deg 18.054 r_dihedral_angle_3_deg 13.125 r_dihedral_angle_1_deg 6.861 r_scangle_it 6.238 r_scbond_it 4.611 r_mcangle_it 2.666 r_mcbond_it 2.143 r_angle_refined_deg 1.538 r_angle_other_deg 0.765 r_mcbond_other 0.764 r_symmetry_vdw_other 0.203 r_nbd_refined 0.189 r_nbd_other 0.184 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.152 r_symmetry_hbond_refined 0.144 r_symmetry_vdw_refined 0.098 r_chiral_restr 0.09 r_nbtor_other 0.083 r_metal_ion_refined 0.025 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2956 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction SOLVE phasing SHARP phasing DM phasing RESOLVE phasing MOSFLM data reduction CCP4 data scaling