2FQD

Crystal Structures of E. coli Laccase CueO under different copper binding situations


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.629316% polyethylene glycol 4000, 5% Isopropanol, 100mM tri-Sodium Citrate dihydrate pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1843.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.343α = 90
b = 73.319β = 90
c = 183.676γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-07-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBSRF BEAMLINE 3W1A1.0BSRF3W1A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.491.67981839518395

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.491.671836293898.060.1680.1650.223RANDOM25.309
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.89-1.470.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.034
r_dihedral_angle_4_deg15.67
r_dihedral_angle_3_deg13.308
r_dihedral_angle_1_deg6.451
r_scangle_it1.592
r_mcangle_it1.349
r_angle_refined_deg1.216
r_scbond_it1.004
r_mcbond_it0.786
r_angle_other_deg0.747
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.034
r_dihedral_angle_4_deg15.67
r_dihedral_angle_3_deg13.308
r_dihedral_angle_1_deg6.451
r_scangle_it1.592
r_mcangle_it1.349
r_angle_refined_deg1.216
r_scbond_it1.004
r_mcbond_it0.786
r_angle_other_deg0.747
r_symmetry_vdw_refined0.217
r_symmetry_vdw_other0.208
r_nbd_refined0.185
r_nbd_other0.181
r_nbtor_refined0.166
r_xyhbond_nbd_refined0.131
r_symmetry_hbond_refined0.106
r_mcbond_other0.106
r_metal_ion_refined0.091
r_nbtor_other0.083
r_chiral_restr0.067
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3529
Nucleic Acid Atoms
Solvent Atoms225
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
SCALEPACKdata scaling
AMoREphasing