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The crystal structure of the transcriptional regulator (TetR family) from Bacillus cereus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 25% PEG3350, 0.2M NaCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.28 46.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.891 α = 90 b = 67.648 β = 90 c = 111.25 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2004-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 55.64 94.7 0.059 40.5 12.2 18056 17099 2 2 29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.795 1.841 80 0.68 1.45 7.8 1280
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.79 55.64 18056 17099 925 94.7 0.2368 0.23683 0.2355 0.2408 0.26208 0.2449 RANDOM 28.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 0.17 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.015 r_dihedral_angle_4_deg 19.849 r_dihedral_angle_3_deg 16.01 r_dihedral_angle_1_deg 5.01 r_scangle_it 3.075 r_scbond_it 2.327 r_angle_refined_deg 1.311 r_mcangle_it 1.236 r_mcbond_it 0.935 r_angle_other_deg 0.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.015 r_dihedral_angle_4_deg 19.849 r_dihedral_angle_3_deg 16.01 r_dihedral_angle_1_deg 5.01 r_scangle_it 3.075 r_scbond_it 2.327 r_angle_refined_deg 1.311 r_mcangle_it 1.236 r_mcbond_it 0.935 r_angle_other_deg 0.847 r_symmetry_vdw_other 0.239 r_nbd_refined 0.209 r_mcbond_other 0.193 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.19 r_nbd_other 0.184 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.158 r_nbtor_other 0.084 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_xyhbond_nbd_other 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1464 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling CNS phasing