☰ Navigation Tabs
West Nile Virus NS2B/NS3protease in complex with Bz-Nle-Lys-Arg-Arg-H
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other inhouse - obtained by SAD phasing
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 298 2 M ammonioum sulfate, 100mM HEPES., pH 8.5, VAPOR DIFFUSION, temperature 321K
Crystal Properties Matthews coefficient Solvent content 2.42 49.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.425 α = 90 b = 93.425 β = 90 c = 47.435 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00005 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 81 97.9 0.047 21.5 5.6 26547 26547 -3 30.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.73 92.4 0.313 3.8 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse - obtained by SAD phasing 1.68 46.73 25216 25216 1328 97.87 0.18247 0.18054 0.2188 0.2892 RANDOM 30.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.32 -0.66 -1.32 1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.996 r_dihedral_angle_4_deg 15.465 r_dihedral_angle_3_deg 13.167 r_dihedral_angle_1_deg 6.491 r_scangle_it 3.138 r_scbond_it 2.034 r_mcangle_it 1.485 r_angle_refined_deg 1.388 r_mcbond_it 0.913 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.996 r_dihedral_angle_4_deg 15.465 r_dihedral_angle_3_deg 13.167 r_dihedral_angle_1_deg 6.491 r_scangle_it 3.138 r_scbond_it 2.034 r_mcangle_it 1.485 r_angle_refined_deg 1.388 r_mcbond_it 0.913 r_nbtor_refined 0.306 r_nbd_refined 0.195 r_symmetry_hbond_refined 0.154 r_symmetry_vdw_refined 0.14 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.105 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1486 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling CNX phasing