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Crystal Structure of the Shigella flexneri Farnesyl Pyrophosphate Synthase Complex with an Isopentenyl Pyrophosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 0.1M HEPES sodium salt, 0.4M Sodium phosphate, 0.4M Potassium phosphate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.56 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.664 α = 90 b = 75.664 β = 90 c = 216.66 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Mirrors 2005-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 1.000000 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 65.51 97.3 0.02 57.66 6.5 45940 45940 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 87.8 0.235 7.5 5.37 6624
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 65.51 43786 2321 97.7 0.18369 0.18369 0.18115 0.1855 0.2329 0.1842 RANDOM 51.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 -0.59 -1.17 1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.01 r_dihedral_angle_4_deg 12.288 r_dihedral_angle_3_deg 10.928 r_scangle_it 4.377 r_scbond_it 3.057 r_dihedral_angle_1_deg 2.391 r_mcangle_it 1.806 r_angle_refined_deg 1.445 r_mcbond_it 1.215 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.01 r_dihedral_angle_4_deg 12.288 r_dihedral_angle_3_deg 10.928 r_scangle_it 4.377 r_scbond_it 3.057 r_dihedral_angle_1_deg 2.391 r_mcangle_it 1.806 r_angle_refined_deg 1.445 r_mcbond_it 1.215 r_nbtor_refined 0.297 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.208 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.149 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4261 Nucleic Acid Atoms Solvent Atoms 348 Heterogen Atoms 63
Software Software Software Name Purpose XDS data scaling XDS data reduction SHARP phasing REFMAC refinement