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Crystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TTU PDB ENTRY 1TTU PDB ENTRY 1OT8 experimental model PDB 1OT8 PDB ENTRY 1TTU PDB ENTRY 1OT8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.5 277 10% PEG 10K, 0.15M Ammonium Acetate, 0.1M BisTris, 10% ethylene glycol, pH 5.5, MICROBATCH, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.39 63.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.093 α = 90 b = 96.785 β = 90 c = 243.538 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MAR CCD 165 mm 2005-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.9796 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.12 50 98.3 0.086 25 13.5 52029 47404 1 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.12 3.23 88.2 0.465 3.2 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS, MIRAS, MR THROUGHOUT PDB ENTRY 1TTU
PDB ENTRY 1OT8 3.12 43.51 47404 4706 88.6 0.273 0.273 0.276 0.34 0.3267 RANDOM 103.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 42.09 -16.09 -26.01
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 28.18 c_dihedral_angle_d 23.7 c_mcangle_it 22.73 c_scbond_it 19.92 c_mcbond_it 14.64 c_angle_deg 1.5 c_improper_angle_d 1.1 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 28.18 c_dihedral_angle_d 23.7 c_mcangle_it 22.73 c_scbond_it 19.92 c_mcbond_it 14.64 c_angle_deg 1.5 c_improper_angle_d 1.1 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6330 Nucleic Acid Atoms 609 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing