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PseC aminotransferase with external aldimine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.5 microL of PseC-product with 1.5 microL of reservoir solution (0.1 M Hepes pH 7.5, 25% PEG 3350), VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.48 50.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.6 α = 90 b = 145.7 β = 90 c = 66 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 89.9 0.053 25.3 5.4 122065 122065 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 50 122065 115867 6144 89.87 0.15379 0.15263 0.1593 0.17595 0.1817 RANDOM 19.897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.04 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_3_deg 11.493 r_dihedral_angle_4_deg 9.93 r_scangle_it 7.007 r_dihedral_angle_1_deg 5.903 r_scbond_it 4.511 r_mcangle_it 2.759 r_mcbond_it 1.858 r_angle_refined_deg 1.277 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_3_deg 11.493 r_dihedral_angle_4_deg 9.93 r_scangle_it 7.007 r_dihedral_angle_1_deg 5.903 r_scbond_it 4.511 r_mcangle_it 2.759 r_mcbond_it 1.858 r_angle_refined_deg 1.277 r_nbtor_refined 0.312 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.116 r_symmetry_vdw_refined 0.1 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5932 Nucleic Acid Atoms Solvent Atoms 837 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing