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Crystal structure of a glutathione s-transferase (atu5508) from agrobacterium tumefaciens str. c58 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 18.00% PEG 3350, 0.2M Potassium Thiocyanate, 10.00% Glycerol, additive - 0.01M spermine tetra-HCL, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.67 53.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.204 α = 90 b = 50.261 β = 115.72 c = 117.66 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC Water cooled, Sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror 2004-02-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979127, 0.964062, 0.979291 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 44.6 95 0.08 18.9 3.1 37755 23.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 78.1 64.8 0.196 5.1 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 44.55 35858 1871 94.61 0.183 0.18306 0.181 0.187 0.219 0.2251 RANDOM 11.467
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.2 1.25 -0.32 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.922 r_dihedral_angle_4_deg 21.161 r_dihedral_angle_3_deg 14.119 r_dihedral_angle_1_deg 6.858 r_scangle_it 6.369 r_scbond_it 4.921 r_mcangle_it 2.591 r_mcbond_it 1.642 r_angle_refined_deg 1.514 r_angle_other_deg 1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.922 r_dihedral_angle_4_deg 21.161 r_dihedral_angle_3_deg 14.119 r_dihedral_angle_1_deg 6.858 r_scangle_it 6.369 r_scbond_it 4.921 r_mcangle_it 2.591 r_mcbond_it 1.642 r_angle_refined_deg 1.514 r_angle_other_deg 1.07 r_mcbond_other 0.452 r_nbd_refined 0.266 r_symmetry_vdw_other 0.225 r_nbd_other 0.221 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.156 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.092 r_nbtor_other 0.084 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3617 Nucleic Acid Atoms Solvent Atoms 394 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction DENZO data reduction SHARP phasing