2FNA

Crystal structure of an archaeal aaa+ atpase (sso1545) from sulfolobus solfataricus p2 at 2.00 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION,SITTING DROP,NANODROP9.527720.0% PEG-8000, 0.1M CHES, pH 9.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4148.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.36α = 90
b = 108.35β = 100.31
c = 70.57γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDAdjustable focusing mirrors in K-B geometry2005-10-31MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.95372, 0.979996APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1269.591.60.0679.533.253921
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0779.679.60.4242.05

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT269.551161273397.510.1770.176560.1740.226RANDOM36.569
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.3-0.711.170.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.827
r_dihedral_angle_4_deg17.074
r_dihedral_angle_3_deg14.787
r_scangle_it6.568
r_dihedral_angle_1_deg5.772
r_scbond_it4.934
r_mcangle_it2.923
r_mcbond_it1.961
r_angle_refined_deg1.425
r_angle_other_deg0.818
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.827
r_dihedral_angle_4_deg17.074
r_dihedral_angle_3_deg14.787
r_scangle_it6.568
r_dihedral_angle_1_deg5.772
r_scbond_it4.934
r_mcangle_it2.923
r_mcbond_it1.961
r_angle_refined_deg1.425
r_angle_other_deg0.818
r_mcbond_other0.485
r_symmetry_vdw_other0.218
r_nbd_refined0.214
r_nbtor_refined0.185
r_nbd_other0.176
r_xyhbond_nbd_refined0.163
r_symmetry_hbond_refined0.12
r_symmetry_vdw_refined0.119
r_chiral_restr0.082
r_nbtor_other0.082
r_xyhbond_nbd_other0.018
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5688
Nucleic Acid Atoms
Solvent Atoms347
Heterogen Atoms84

Software

Software
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHELXphasing
SHARPphasing