☰ Navigation Tabs
Crystal Structure of the Salmonella Secretion Chaperone InvB in Complex with SipA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 298 27mg/ml protein with an equilibration buffer consisting of 3.8M Na-formate, 0.9M Na-cacodylate pH 5.2 and 0.09M guanidine-hydrochloride as an additive, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.34 71.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.505 α = 90 b = 146.505 β = 90 c = 156.67 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 0.979 NSLS X9A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 99 99.2 0.072 8.6 66495 66495
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 98.7 6.5 6487
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 99 49515 49515 2514 97.46 0.2 0.19999 0.198 0.2091 0.24 0.2493 RANDOM 30.011
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.33 -0.65 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.495 r_dihedral_angle_4_deg 18.96 r_dihedral_angle_3_deg 15.628 r_dihedral_angle_1_deg 5.914 r_scangle_it 3.689 r_scbond_it 2.593 r_mcangle_it 1.46 r_angle_refined_deg 1.4 r_mcbond_it 1.26 r_angle_other_deg 0.821
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.495 r_dihedral_angle_4_deg 18.96 r_dihedral_angle_3_deg 15.628 r_dihedral_angle_1_deg 5.914 r_scangle_it 3.689 r_scbond_it 2.593 r_mcangle_it 1.46 r_angle_refined_deg 1.4 r_mcbond_it 1.26 r_angle_other_deg 0.821 r_symmetry_vdw_other 0.298 r_symmetry_hbond_refined 0.289 r_xyhbond_nbd_refined 0.238 r_nbd_refined 0.22 r_mcbond_other 0.196 r_nbd_other 0.18 r_symmetry_vdw_refined 0.178 r_nbtor_refined 0.175 r_xyhbond_nbd_other 0.093 r_nbtor_other 0.086 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3693 Nucleic Acid Atoms Solvent Atoms 612 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SOLVE phasing