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Oxidized (All ferric) form of the Azotobacter vinelandii bacterioferritin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 291 25% ethanol, 100 mM imidazole, 200 mM Magnesium chloride, Capillary batch method, pH 8.0, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.95 58.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.48 α = 90 b = 124.48 β = 90 c = 285.112 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 4 2005-07-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.65 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 98.5 0.095 0.088 27.8 6 90412 89043 2 1 48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 98.8 0.289 0.279 6.8 4 4444
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 27.57 90412 89043 4405 98.6 0.203 0.203 0.203 0.1894 0.256 0.2426 RANDOM 36.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.91 7.41 6.91 -13.82
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 17.8 c_angle_deg 1.1 c_improper_angle_d 0.84 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10096 Nucleic Acid Atoms Solvent Atoms 387 Heterogen Atoms 203
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing