☰ Navigation Tabs
The crystal structure of engineered OspA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.3 293 22% PEG1000, 0.1M Acetate, 0.2M litium sulfate, 3% MPD, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.84 56.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.15 α = 90 b = 105.5 β = 93.24 c = 88.981 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 98.9 0.061 24.17 4.9 24305 24305
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 100 0.147 10.19 5 2426
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 20 23829 22668 1161 98.52 0.24866 0.24866 0.24697 0.2468 0.28162 0.2476 RANDOM 79.512
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.13 6.75 6.75 -3.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.885 r_dihedral_angle_3_deg 17.951 r_dihedral_angle_4_deg 11.549 r_dihedral_angle_1_deg 5.562 r_scangle_it 1.137 r_angle_refined_deg 1.102 r_scbond_it 0.614 r_mcangle_it 0.439 r_mcbond_it 0.23 r_symmetry_vdw_refined 0.202
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.885 r_dihedral_angle_3_deg 17.951 r_dihedral_angle_4_deg 11.549 r_dihedral_angle_1_deg 5.562 r_scangle_it 1.137 r_angle_refined_deg 1.102 r_scbond_it 0.614 r_mcangle_it 0.439 r_mcbond_it 0.23 r_symmetry_vdw_refined 0.202 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.068 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8334 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing