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Human protein kinase C, eta
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GMI pdb entry 1GMI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 22% PEG3350, 0.2M CaCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.14 42.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.007 α = 90 b = 49.404 β = 90 c = 67.508 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2005-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 19.93 97.5 0.068 31.3 6.2 15364 15364 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 77.5 0.315 3.35 2.8 1193
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1GMI 1.75 19.93 15323 14560 761 97.7 0.17994 0.17817 0.1808 0.21458 0.2147 RANDOM 22.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.05 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.836 r_dihedral_angle_4_deg 18.554 r_dihedral_angle_3_deg 10.952 r_dihedral_angle_1_deg 6.341 r_scangle_it 5.418 r_scbond_it 3.667 r_mcangle_it 2.622 r_mcbond_it 1.973 r_angle_refined_deg 1.629 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.836 r_dihedral_angle_4_deg 18.554 r_dihedral_angle_3_deg 10.952 r_dihedral_angle_1_deg 6.341 r_scangle_it 5.418 r_scbond_it 3.667 r_mcangle_it 2.622 r_mcbond_it 1.973 r_angle_refined_deg 1.629 r_nbtor_refined 0.31 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.14 r_symmetry_hbond_refined 0.115 r_bond_refined_d 0.018 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1109 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing ARP/wARP model building