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Solution structure of the SCAN homodimer from MZF-1/ZNF42
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D_15N-separated_NOESY
2 mM ZNF-42 U-15N/13C, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O
90% H2O/10% D2O
99 mM
7.4
AMBIENT
298
2
3D_13C-separated_NOESY
2 mM ZNF-42 U-15N/13C, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O
90% H2O/10% D2O
99 mM
7.4
AMBIENT
298
3
3D_13C-separated_NOESY (AROMATIC)
2 mM ZNF-42 U-15N/13C, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O
90% H2O/10% D2O
99 mM
7.4
AMBIENT
298
4
3D_13C-F1-filtered-13C-F3-separated_NOESY
1.7 mM ZNF-42 U-15N/13C, 1.7 mM unlabeled ZNF-42, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O
90% H2O/10% D2O
99 mM
7.4
AMBIENT
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DRX
600
NMR Refinement
Method
Details
Software
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT.
FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT
HOMODIMER STRUCTURES ARE BASED ON A TOTAL OF 4063 NOE CONSTRAINTS ( 843 INTRA, 818 SEQUENTIAL, 1029 MEDIUM, 750 INTRAMONOMER LONG RANGE AND 623 INTERMONOMER NOE CONSTRAINTS)
AND 264 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. CONSTRAINTS WERE ASSIGNED AND VALIDATED IN ONE MONOMER AND THEN DUPLICATED TO GENERATE A SYMMETRY RELATED CONSTRAINTS IN THE SECOND MONOMER. CONSTRAINT TOTALS LISTED ABOVE INCLUDE CONSTRAINTS FROM BOTH MONOMERS.
XPLOR-NIH
NMR Ensemble Information
Conformer Selection Criteria
target function
Conformers Calculated Total Number
100
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Additional NMR Experimental Information
Details
ALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED USING A CRYOGENIC PROBE