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Pseudomonas aeruginosa SPM-1 metallo-beta-lactamase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 100mM Tris.Cl,
2.0M ammonium sulphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.55 51.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.936 α = 90 b = 126.936 β = 90 c = 90.461 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-02-26 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD CUSTOM-MADE 2003-02-28 M MAD 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97948 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 19-ID 1.28348, 1.28402, 1.2574 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 50 99.9 0.063 5.6 42802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 100 0.599 5.5 4251
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 10 42499 2146 99.95 0.196 0.194 0.1933 0.247 0.2458 RANDOM 29.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.09 0.17 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.689 r_dihedral_angle_4_deg 17.937 r_dihedral_angle_3_deg 15.372 r_dihedral_angle_1_deg 5.733 r_sphericity_free 3.967 r_scangle_it 2.868 r_sphericity_bonded 2.219 r_scbond_it 1.9 r_mcangle_it 1.384 r_rigid_bond_restr 1.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.689 r_dihedral_angle_4_deg 17.937 r_dihedral_angle_3_deg 15.372 r_dihedral_angle_1_deg 5.733 r_sphericity_free 3.967 r_scangle_it 2.868 r_sphericity_bonded 2.219 r_scbond_it 1.9 r_mcangle_it 1.384 r_rigid_bond_restr 1.244 r_angle_refined_deg 1.232 r_mcbond_it 0.887 r_nbtor_refined 0.305 r_metal_ion_refined 0.23 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.197 r_symmetry_hbond_refined 0.162 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3822 Nucleic Acid Atoms Solvent Atoms 358 Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction