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Trypanosoma Rangeli Sialidase In Complex With 2,3- Difluorosialic Acid (Covalent Intermediate)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 291 PEG 8000, AMMONIUM SULFATE, SODIUM CACODYLATE, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.76 55.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.873 α = 90 b = 95.007 β = 90 c = 110.751 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 72.17 89.8 0.067 0.067 9.4 2.5 36222 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 90.8 0.34 0.34 2 2.3
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS 2.2 29.5 36190 36190 1817 88.8 0.164 0.16 0.1738 0.232 0.2355 RANDOM 28.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.648 -1.065 -1.584
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.77 r_dihedral_angle_4_deg 16.935 r_dihedral_angle_3_deg 14.228 r_dihedral_angle_1_deg 7.847 r_scangle_it 3.428 r_scbond_it 2.409 r_angle_refined_deg 1.841 r_mcangle_it 1.566 r_mcbond_it 1.246 r_angle_other_deg 0.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.77 r_dihedral_angle_4_deg 16.935 r_dihedral_angle_3_deg 14.228 r_dihedral_angle_1_deg 7.847 r_scangle_it 3.428 r_scbond_it 2.409 r_angle_refined_deg 1.841 r_mcangle_it 1.566 r_mcbond_it 1.246 r_angle_other_deg 0.895 r_mcbond_other 0.264 r_symmetry_vdw_other 0.263 r_nbd_refined 0.208 r_nbd_other 0.195 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.16 r_chiral_restr 0.11 r_nbtor_other 0.089 r_xyhbond_nbd_other 0.052 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4822 Nucleic Acid Atoms Solvent Atoms 388 Heterogen Atoms 37
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling