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Crystal Structure of General Stress Protein from Bacteroides thetaiotaomicron
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 295 0.20M magnesium chloride, 0.1M bis-tris pH 5.5, 25%w/v polyethylene glycol 3350, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.12 41.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.223 α = 90 b = 66.28 β = 114.77 c = 50.69 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97922 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 50 90.5 0.087 10.7 7.4 20346 19822
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.95 53.4 0.352 2.34 4.8 1184
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.87 26.89 17805 17805 1999 90.28 0.1991 0.1991 0.19284 0.1909 0.25347 0.2495 RANDOM 33.104
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.88 2.3 -0.3 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.647 r_dihedral_angle_4_deg 22.314 r_dihedral_angle_3_deg 19.529 r_dihedral_angle_1_deg 6.002 r_scangle_it 3.4 r_scbond_it 2.192 r_angle_refined_deg 1.391 r_mcangle_it 1.39 r_mcbond_it 0.918 r_symmetry_vdw_refined 0.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.647 r_dihedral_angle_4_deg 22.314 r_dihedral_angle_3_deg 19.529 r_dihedral_angle_1_deg 6.002 r_scangle_it 3.4 r_scbond_it 2.192 r_angle_refined_deg 1.391 r_mcangle_it 1.39 r_mcbond_it 0.918 r_symmetry_vdw_refined 0.273 r_nbd_refined 0.221 r_symmetry_hbond_refined 0.218 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.109 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2113 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing MLPHARE phasing RESOLVE phasing SHELXE model building SHELXD phasing