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High resolution X-ray structure of Omp32 in complex with malate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 PEG4000, pH 8.5, VAPOR DIFFUSION, temperature 20K, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.35 71.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.21 α = 90 b = 106.21 β = 90 c = 93.21 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.0053 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 20 95.1 103506 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.54 87.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 20 103506 103506 5173 98.47 0.15 0.149 0.149 0.1515 0.171 0.1513 RANDOM 15.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1 0.5 1 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.57 r_scangle_it 6.034 r_scbond_it 4.149 r_mcangle_it 2.573 r_angle_refined_deg 1.772 r_mcbond_it 1.656 r_angle_other_deg 0.911 r_nbd_other 0.282 r_symmetry_vdw_refined 0.282 r_nbd_refined 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.57 r_scangle_it 6.034 r_scbond_it 4.149 r_mcangle_it 2.573 r_angle_refined_deg 1.772 r_mcbond_it 1.656 r_angle_other_deg 0.911 r_nbd_other 0.282 r_symmetry_vdw_refined 0.282 r_nbd_refined 0.28 r_symmetry_vdw_other 0.259 r_symmetry_hbond_refined 0.237 r_xyhbond_nbd_refined 0.229 r_chiral_restr 0.138 r_nbtor_other 0.087 r_metal_ion_refined 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2447 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling MOLREP phasing