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CRYSTAL STRUCTURE OF a DUF89 family protein (AF1104) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.45 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 4.2 277 2.0M ammonium sulfate, 0.1M Phosphate Citrate, pH 4.2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.48 50.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.806 α = 90 b = 80.677 β = 90 c = 120.868 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-07-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97932, 0.97918, 0.91837 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 29.9 99.7 0.087 0.087 6.6 3.7 25288
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.51 100 0.657 0.657 1.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.45 29.9 23975 1288 99.43 0.192 0.19189 0.189 0.195 0.255 0.2535 RANDOM 47.777
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 -1.78 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.51 r_dihedral_angle_4_deg 18.273 r_dihedral_angle_3_deg 16.531 r_scangle_it 7 r_dihedral_angle_1_deg 6.039 r_scbond_it 4.776 r_mcangle_it 2.372 r_mcbond_it 1.605 r_angle_refined_deg 1.39 r_angle_other_deg 0.801
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.51 r_dihedral_angle_4_deg 18.273 r_dihedral_angle_3_deg 16.531 r_scangle_it 7 r_dihedral_angle_1_deg 6.039 r_scbond_it 4.776 r_mcangle_it 2.372 r_mcbond_it 1.605 r_angle_refined_deg 1.39 r_angle_other_deg 0.801 r_mcbond_other 0.329 r_symmetry_vdw_refined 0.307 r_nbd_refined 0.226 r_symmetry_vdw_other 0.195 r_nbtor_refined 0.183 r_nbd_other 0.168 r_xyhbond_nbd_refined 0.148 r_nbtor_other 0.087 r_chiral_restr 0.069 r_symmetry_hbond_refined 0.058 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4066 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing