☰ Navigation Tabs
Mycobacterium tuberculosis EmbR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 285 0.1 M Na-Hepes, pH 7.5, 15% PEG 4000, 0.2 M magnesium choride, 5 mM dithiothreitol, VAPOR DIFFUSION, HANGING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.74 55.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.172 α = 90 b = 83.614 β = 90 c = 140.815 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 100 CCD MARRESEARCH 2004-11-28 2 1 x-ray 100 CCD MARRESEARCH 2004-11-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3 2 SYNCHROTRON ESRF BEAMLINE BM14 0.9783,0.9887,0.9686 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 2 2 44.4 100 0.089 20.6 11.1 31575 31575
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2 2.11 100 0.47 4.2 10 4565
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 42 29959 29959 1591 99.98 0.20837 0.20837 0.20727 0.2096 0.22842 0.2297 RANDOM 25.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 -0.93 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.789 r_dihedral_angle_4_deg 20.318 r_dihedral_angle_3_deg 14.78 r_dihedral_angle_1_deg 5.023 r_scangle_it 2.073 r_scbond_it 1.249 r_angle_refined_deg 1.061 r_mcangle_it 0.767 r_mcbond_it 0.443 r_symmetry_vdw_refined 0.402
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.789 r_dihedral_angle_4_deg 20.318 r_dihedral_angle_3_deg 14.78 r_dihedral_angle_1_deg 5.023 r_scangle_it 2.073 r_scbond_it 1.249 r_angle_refined_deg 1.061 r_mcangle_it 0.767 r_mcbond_it 0.443 r_symmetry_vdw_refined 0.402 r_nbtor_refined 0.294 r_symmetry_hbond_refined 0.218 r_nbd_refined 0.187 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2847 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing