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Structure of a putative ribosomal-protein-serine acetyltransferase from Vibrio cholerae.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 0.1M Bis-Tris propane, 4M NaNO3, sucrose, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.5 50.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.051 α = 90 b = 103.065 β = 90 c = 37.861 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD ADSC QUANTUM 315 2005-03-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97915, 0.97929 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 95.84 22626 22626
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.744 86.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 50 22626 21470 1156 95.84 0.21239 0.21075 0.2099 0.24394 0.2415 RANDOM 45.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.03 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.122 r_dihedral_angle_4_deg 18.752 r_dihedral_angle_3_deg 16.632 r_dihedral_angle_1_deg 6.709 r_scangle_it 3.947 r_scbond_it 2.8 r_mcangle_it 1.766 r_angle_refined_deg 1.681 r_mcbond_it 1.179 r_symmetry_vdw_refined 0.389
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.122 r_dihedral_angle_4_deg 18.752 r_dihedral_angle_3_deg 16.632 r_dihedral_angle_1_deg 6.709 r_scangle_it 3.947 r_scbond_it 2.8 r_mcangle_it 1.766 r_angle_refined_deg 1.681 r_mcbond_it 1.179 r_symmetry_vdw_refined 0.389 r_symmetry_hbond_refined 0.345 r_nbtor_refined 0.319 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1417 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling PHENIX phasing autoSHARP phasing ARP/wARP model building