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Structure of small TOPRIM domain protein from Bacillus stearothermophilus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 0.1M MES pH6.0; 26% PEG3350; 0.2M Ammonium Sulfate; 18% glycerol; protein concentration 3.5mg/ml; micro-seeding, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.88 34.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.617 α = 90 b = 72.72 β = 90 c = 116.299 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99.5 0.032 76.8 15.7 77810 2 17.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 94.4 0.536 2 4.8 3640
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 50 75438 1538 99.54 0.19238 0.1919 0.2314 0.21399 0.2324 RANDOM 23.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.37 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.497 r_dihedral_angle_3_deg 13.164 r_dihedral_angle_4_deg 12.911 r_dihedral_angle_1_deg 6.192 r_scangle_it 3.198 r_mcangle_it 2.345 r_scbond_it 2.29 r_mcbond_it 1.691 r_angle_refined_deg 1.163 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.497 r_dihedral_angle_3_deg 13.164 r_dihedral_angle_4_deg 12.911 r_dihedral_angle_1_deg 6.192 r_scangle_it 3.198 r_mcangle_it 2.345 r_scbond_it 2.29 r_mcbond_it 1.691 r_angle_refined_deg 1.163 r_nbtor_refined 0.321 r_symmetry_hbond_refined 0.267 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.231 r_xyhbond_nbd_refined 0.219 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2792 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling