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Acetyltransferase domain of CDY1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 300 20%v PEG3350, 0.2M Am2SO4, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.46 49.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.925 α = 90 b = 133.767 β = 90 c = 122.629 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 100 95.3 41415 41415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.36 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.28 87.71 39288 39288 2088 95.06 0.19065 0.18729 0.1898 0.2527 0.1864 RANDOM 33.076
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.01 -1.72 -1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.148 r_dihedral_angle_4_deg 22.104 r_dihedral_angle_3_deg 18.747 r_dihedral_angle_1_deg 6.487 r_scangle_it 3.055 r_scbond_it 2.003 r_angle_refined_deg 1.621 r_mcangle_it 1.198 r_mcbond_it 0.722 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.148 r_dihedral_angle_4_deg 22.104 r_dihedral_angle_3_deg 18.747 r_dihedral_angle_1_deg 6.487 r_scangle_it 3.055 r_scbond_it 2.003 r_angle_refined_deg 1.621 r_mcangle_it 1.198 r_mcbond_it 0.722 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.302 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.121 r_symmetry_hbond_refined 0.118 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5718 Nucleic Acid Atoms Solvent Atoms 355 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing