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The crystal structure of transcriptional regulator PA4135
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 297 0.2M Mg Acetate, 20% PEG3350, 0.1M Na Acetate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.86 57.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.782 α = 90 b = 84.782 β = 90 c = 91.683 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2005-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979522 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 38.49 95.8 0.047 30.9 6 11144 11144 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 71.8 0.352 2.2 4.2 1542
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 38.49 11144 11144 577 98.64 0.22525 0.22525 0.22259 0.219 0.27645 0.2689 RANDOM 39.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 0.55 1.1 -1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.144 r_dihedral_angle_4_deg 24.46 r_dihedral_angle_3_deg 19.629 r_dihedral_angle_1_deg 6.401 r_scangle_it 5.008 r_scbond_it 3.173 r_mcangle_it 1.915 r_angle_refined_deg 1.852 r_mcbond_it 1.148 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.144 r_dihedral_angle_4_deg 24.46 r_dihedral_angle_3_deg 19.629 r_dihedral_angle_1_deg 6.401 r_scangle_it 5.008 r_scbond_it 3.173 r_mcangle_it 1.915 r_angle_refined_deg 1.852 r_mcbond_it 1.148 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.254 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.209 r_symmetry_hbond_refined 0.191 r_chiral_restr 0.135 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1120 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SnB phasing