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Structural Genomics; The crystal structure of the hypothetical membrane spanning protein from Bacillus cereus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 287 0.18M Sodium Malonate, 18% PEG3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 3.44 64.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.614 α = 90 b = 109.609 β = 90.07 c = 77.484 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2004-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 77.62 97.2 0.09 26 8.1 62291 61484 2 2 30.92
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 73.1 0.489 1.51 4.9 7786
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 77.62 59141 58372 3111 98.7 0.18325 0.18151 0.1836 0.2153 0.1818 RANDOM 30.915
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.16 3.43 -2.25 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.531 r_dihedral_angle_4_deg 21.376 r_dihedral_angle_3_deg 13.972 r_dihedral_angle_1_deg 5.675 r_scangle_it 3.414 r_scbond_it 2.105 r_mcangle_it 1.303 r_angle_refined_deg 1.212 r_mcbond_it 0.778 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.531 r_dihedral_angle_4_deg 21.376 r_dihedral_angle_3_deg 13.972 r_dihedral_angle_1_deg 5.675 r_scangle_it 3.414 r_scbond_it 2.105 r_mcangle_it 1.303 r_angle_refined_deg 1.212 r_mcbond_it 0.778 r_nbtor_refined 0.3 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.17 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4731 Nucleic Acid Atoms Solvent Atoms 846 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling